// set up drop downs anywhere in the body of the page. I think the bottom of the page is better..
// but you can experiment with effect on loadtime.


if (TransMenu.isSupported()) {

	//==================================================================================================
	// create a set of dropdowns
	//==================================================================================================
	// the first param should always be down, as it is here
	//
	// The second and third param are the top and left offset positions of the menus from their actuators
	// respectively. To make a menu appear a little to the left and bottom of an actuator, you could use
	// something like -5, 5
	//
	// The last parameter can be .topLeft, .bottomLeft, .topRight, or .bottomRight to inidicate the corner
	// of the actuator from which to measure the offset positions above. Here we are saying we want the
	// menu to appear directly below the bottom left corner of the actuator
	//==================================================================================================
	var ms = new TransMenuSet(TransMenu.direction.down, 1, 0, TransMenu.reference.bottomLeft);

	//==================================================================================================
	// create a dropdown menu
	//==================================================================================================
	// the first parameter should be the HTML element which will act actuator for the menu
	//==================================================================================================

			

			
//menu2_news			
		var menu2 = ms.addMenu(document.getElementById("topMenuElement2"));
			menu2.addItem("Updated News", "/silkdb/doc/update.html");
//menu3_database
		var menu3 = ms.addMenu(document.getElementById("topMenuElement3"));
		menu3.addItem("Browse Genome", "/silkdb/genome");
//menu4_database
		var menu4 = ms.addMenu(document.getElementById("topMenuElement4"));
		menu4.addItem("Browse Microarray data", "http://silkworm.swu.edu.cn/microarray");
//menu5_soft
		var menu5 = ms.addMenu(document.getElementById("topMenuElement5"));
			menu5.addItem("SilkMap", "http://silkworm.swu.edu.cn/silksoft/silkmap.html");
			menu5.addItem("BLAST", "http://silkworm.swu.edu.cn/silksoft/blast2-simple.html");
			menu5.addItem("Wego", "http://silkworm.swu.edu.cn/wego");
			menu5.addItem("ClustalW", "http://silkworm.swu.edu.cn/silksoft/clustalw-simple.html");
			menu5.addItem("Cap3", "http://silkworm.swu.edu.cn/silksoft/cap3.html");
			menu5.addItem("bl2seq", "http://silkworm.swu.edu.cn/silksoft/bl2seq-simple.html");
			menu5.addItem("EMBOSS", "");
				var submenu10 = menu5.addMenu(menu5.items[6]);
					submenu10.addItem("cutseq", "http://silkworm.swu.edu.cn/silksoft/cutseq-simple.html");
					submenu10.addItem("tranalign", "http://silkworm.swu.edu.cn/silksoft/tranalign-simple.html");
					submenu10.addItem("showorf", "http://silkworm.swu.edu.cn/silksoft/showorf-simple.html");
					submenu10.addItem("showalign", "http://silkworm.swu.edu.cn/silksoft/showalign-simple.html");
					submenu10.addItem("revseq", "http://silkworm.swu.edu.cn/silksoft/revseq-simple.html");
					submenu10.addItem("pepstats", "http://silkworm.swu.edu.cn/silksoft/pepstats-simple.html");
					submenu10.addItem("est2genome", "http://silkworm.swu.edu.cn/silksoft/est2genome-simple.html");
					submenu10.addItem("backtranseq", "http://silkworm.swu.edu.cn/silksoft/backtranseq-simple.html");
					submenu10.addItem("coderet", "http://silkworm.swu.edu.cn/silksoft/coderet-simple.html");
					submenu10.addItem("compseq", "http://silkworm.swu.edu.cn/silksoft/compseq-simple.html");
					submenu10.addItem("dottup", "http://silkworm.swu.edu.cn/silksoft/dottup-simple.html");
					submenu10.addItem("einverted", "http://silkworm.swu.edu.cn/silksoft/einverted-simple.html");
					submenu10.addItem("equicktandem", "http://silkworm.swu.edu.cn/silksoft/equicktandem-simple.html");
					submenu10.addItem("trimseq", "http://silkworm.swu.edu.cn/silksoft/trimseq-simple.html");
					submenu10.addItem("sirna", "http://silkworm.swu.edu.cn/silksoft/sirna-simple.html");
					submenu10.addItem("needle", "http://silkworm.swu.edu.cn/silksoft/needle-simple.html");
			menu5.addItem("wise2","http://silkworm.swu.edu.cn/silksoft/wise2-simple.html");
			
			
//menu6_resource		
		var menu6 = ms.addMenu(document.getElementById("topMenuElement6"));
			menu6.addItem("FTP", "/silkdb/doc/download.html");
			menu6.addItem("Microarray Data", "http://silkworm.swu.edu.cn/microarray/download.html");
			

//menu7_document
		var menu7 = ms.addMenu(document.getElementById("topMenuElement7"));
			menu7.addItem("Quick Start Guide", "/silkdb/doc/help.html");
			menu7.addItem("FAQs", "/silkdb/doc/FAQs.html");
		
//menu8_link
		var menu8 = ms.addMenu(document.getElementById("topMenuElement8"));
			menu8.addItem("SilkDB (V1.0)", "http://silkdb.genomics.org.cn/silkworm");
			menu8.addItem("SGP", "http://sgp.dna.affrc.go.jp/");
			menu8.addItem("SilkBase", "http://morus.ab.a.u-tokyo.ac.jp");
			menu8.addItem("SilkSatDb", "http://210.212.212.7:9999/PHP/SILKSAT/index.php");
			menu8.addItem("KAIKO 2DDB", "http://kaiko2ddb.dna.affrc.go.jp/cgi-bin/search_2DDB.cgi");
			menu8.addItem("WildSilkBase", "http://www.cdfd.org.in/wildsilkbase/home.php");
			menu8.addItem("ButterflyBase", "http://butterflybase.ice.mpg.de/");
			menu8.addItem("SPODOBASE", "http://bioweb.ensam.inra.fr/spodobase/");
			menu8.addItem("LocustDB", "http://locustdb.genomics.org.cn/");
			menu8.addItem("Antheraea mylitta EST", "http://www.btc.iitkgp.ernet.in/amyBASE/homepage.html");
			menu8.addItem("FlyBase", "http://flybase.bio.indiana.edu/");
			menu8.addItem("BeeBase", "http://racerx00.tamu.edu/bee_resources.html");
			menu8.addItem("AnoBase", "http://www.anobase.org/");

//menu9_about	
		var menu9 = ms.addMenu(document.getElementById("topMenuElement9"));
			menu9.addItem("Overview", "/silkdb/doc/overview.html");
				menu9.addItem("Contact us", "");
			  	var submenu11 = menu9.addMenu(menu9.items[1]);
					submenu11.addItem("Qing-you Xia", "mailto:xiaqy@swu.edu.cn");
					submenu11.addItem("Ze Zhang", "mailto:zezhang@swu.edu.cn");

				
	//==================================================================================================
	// write drop downs into page
	//==================================================================================================
	// this method writes all the HTML for the menus into the page with document.write(). It must be
	// called within the body of the HTML page.
	//==================================================================================================
	TransMenu.renderAll();
}

function menuInit() {
	//==========================================================================================
	// if supported, initialize TransMenus
	//==========================================================================================
	// Check isSupported() so that menus aren't accidentally sent to non-supporting browsers.
	// This is better than server-side checking because it will also catch browsers which would
	// normally support the menus but have javascript disabled.
	//
	// If supported, call initialize() and then hook whatever image rollover code you need to do
	// to the .onactivate and .ondeactivate events for each menu.
	//==========================================================================================
	if (TransMenu.isSupported()) {
		TransMenu.initialize();

		// hook all the highlight swapping of the main toolbar to menu activation/deactivation
		// instead of simple rollover to get the effect where the button stays highlit until
		// the menu is closed.


		
		
				document.getElementById("topMenuElement216").onmouseover = function() {
					window.status ="/";
					ms.hideCurrent();
					this.className = "hover";
				}
				document.getElementById("topMenuElement216").onmouseout = function() {
					window.status ="";
					this.className = "";
				}
			menu2.onactivate = function() { document.getElementById("topMenuElement2").className = "hover"; };
				menu2.ondeactivate = function() { document.getElementById("topMenuElement2").className = "";	};
			menu3.onactivate = function() { document.getElementById("topMenuElement3").className = "hover"; };
				menu3.ondeactivate = function() { document.getElementById("topMenuElement3").className = "";	};
			menu4.onactivate = function() { document.getElementById("topMenuElement4").className = "hover"; };
				menu4.ondeactivate = function() { document.getElementById("topMenuElement4").className = "";	};
			menu5.onactivate = function() { document.getElementById("topMenuElement5").className = "hover"; };
				menu5.ondeactivate = function() { document.getElementById("topMenuElement5").className = "";	};
			menu6.onactivate = function() { document.getElementById("topMenuElement6").className = "hover"; };
				menu6.ondeactivate = function() { document.getElementById("topMenuElement6").className = "";	};
			menu7.onactivate = function() { document.getElementById("topMenuElement7").className = "hover"; };
				menu7.ondeactivate = function() { document.getElementById("topMenuElement7").className = "";	};
			menu8.onactivate = function() { document.getElementById("topMenuElement8").className = "hover"; };
				menu8.ondeactivate = function() { document.getElementById("topMenuElement8").className = "";	};
			menu9.onactivate = function() { document.getElementById("topMenuElement9").className = "hover"; };
				menu9.ondeactivate = function() { document.getElementById("topMenuElement9").className = "";	};
			
	}
}